A.Inter - Company Transaction: Inter company code is basically used with finance transactions, where single vender has more then one unit.
I.Automatically handle inter-company scenario: This setting is applicable for finance transactions. By enabling this option Process Runner will automatically handle the inter company code scenario. •If inter company screen error is detected during run, prompt user to Auto Fix this error: Enabling this radio button will prompt user to Auto fix the error encountered during run. •Do not prompt to Auto Fix: Enabling this radio button will automatically handle inter-company scenario and do not prompt Auto Fix pop-up during execution.
B.Multiple Company Code Settings:
I.Automatically handle company code changes across multiple documents: This setting is applicable for finance transactions. By enabling this option Process Runner will automatically handle the multiple company code scenario.
•If company code screen is detected during run, prompt user to Auto Fix this error: Enabling this radio button will prompt user to Auto fix the error encountered during run. •Do not prompt to Auto Fix: Enabling this radio button will automatically handle multiple company code scenario and do not prompt Auto Fix pop-up during execution.

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